PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003180.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 162aa    MW: 17463.7 Da    PI: 9.1241
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003180.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172372255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Itr_sc003180.1_g00001.1 23 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPLAAARAYDTAVYYLRG 72
                             59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-292381IPR001471AP2/ERF domain
PROSITE profilePS5103221.9832380IPR001471AP2/ERF domain
SMARTSM003804.8E-362386IPR001471AP2/ERF domain
PfamPF008473.9E-112472IPR001471AP2/ERF domain
CDDcd000182.03E-262482No hitNo description
SuperFamilySSF541711.83E-202481IPR016177DNA-binding domain
PRINTSPR003673.1E-112435IPR001471AP2/ERF domain
PRINTSPR003673.1E-116282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGQGGGGDD GGCCSGKRKK ERPYKGIRMR KWGKWVAEIR EPNKRSRIWL GSYSTPLAAA  60
RAYDTAVYYL RGPSARLNFP ELLPGDAAGL NGLNDLSADS IRKKAIEVGS SVDATQTTTL  120
RGGGGGGAVQ EQPPPPLTAC RLQAKLDLNE KPEPEDPNLD YF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-142080263ATERF1
3gcc_A3e-142080263ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016505621.12e-71PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9FH949e-51ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLM0ZXP85e-69M0ZXP8_SOLTU; Uncharacterized protein
TrEMBLA0A0V0INJ85e-69A0A0V0INJ8_SOLCH; Putative ethylene-responsive transcription factor RAP2-10-like
STRINGPGSC0003DMT4000102281e-68(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.17e-52cooperatively regulated by ethylene and jasmonate 1